PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Han001554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Heliantheae alliance; Heliantheae; Helianthus
Family ERF
Protein Properties Length: 298aa    MW: 33122.1 Da    PI: 7.1273
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-169a-Helianthus_annuus-35181PU_refplantGDBView CDS
gnl|UG|Han#S32084534PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20128177255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a++ a+ kl+g
  Han001554 128 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDIAAYKLRG 177
                59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.06E-33127187No hitNo description
SuperFamilySSF541713.01E-23128186IPR016177DNA-binding domain
SMARTSM003803.1E-38128191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-32128186IPR001471AP2/ERF domain
PROSITE profilePS5103223.499128185IPR001471AP2/ERF domain
PfamPF008477.7E-14129177IPR001471AP2/ERF domain
PRINTSPR003672.6E-11129140IPR001471AP2/ERF domain
PRINTSPR003672.6E-11151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MASAVMEFWS VDNMQRFTGG DLMDALEPFI KPDYQNTPPS SSPSTSDPCP FSAFSSSSTS  60
SPSQESGFYP DLYFPTQQPV SSFGVNHLTP SQIHQIQTQI NLPGYNNYLG PKPVLMKQVK  120
SDPKPTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDI AAYKLRGDYA  180
RLNFPHLRHN GSDFNGYKPL HSSVDAKLQE ICRNLADGKS IDAGKKKSSR RSAAVKKSPA  240
VEKPEVVKIE SSESVGSGGS SPASELSLPE FTEEESAWCA LDNMLEKYPS YEIDWAAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20127185160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307390.21e-93hypothetical protein POPTR_0005s16690g
SwissprotQ8H1E41e-81RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A023JIR11e-144A0A023JIR1_CICIN; DREB6-like protein
STRINGPOPTR_0005s16690.14e-93(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-57related to AP2 4